A Smrt® Approach for Finishing Plant and Animal Genomes
ثبت نشده
چکیده
www.pacb.com/denovo In the days of Sanger sequencing, organisms considered most scientifically important were targeted for high-quality, finished genomes. There was no question that this was an expensive and laborious goal, but it was widely accepted that a finished genome answered questions that no draft assembly ever could. As short-read sequencing technologies became available, they were embraced for their cost-effectiveness — but genome finishing, which was virtually impossible with such short reads, was a necessary casualty.
منابع مشابه
Effect of biostimulants on water content and micronutrients and macronutrients of Puccinellia distans under salinity stress
Abstract: Biostimulants are a variety of compounds of plant and animal origin that are used to improve the quality of plant growth. In this study, which was conducted in 1399, the effect of commercial biostimulant Algabon®, algal biostimulant [seaweed extract (SWE)], and namid (amino acid biostimulant) on the plant Puccinellia distans to reduce the effects of salinity stress by improving growt...
متن کاملReconstructing complex regions of genomes using long-read sequencing technology.
Obtaining high-quality sequence continuity of complex regions of recent segmental duplication remains one of the major challenges of finishing genome assemblies. In the human and mouse genomes, this was achieved by targeting large-insert clones using costly and laborious capillary-based sequencing approaches. Sanger shotgun sequencing of clone inserts, however, has now been largely abandoned, l...
متن کاملPredicting CpG Islands and Their Relationship with Genomic Feature in Cattle by Hidden Markov Model Algorithm
Cattle supply an important source of nutrition for humans in the world. CpG islands (CGIs) are very important and useful, as they carry functionally relevant epigenetic loci for whole genome studies. As a matter of fact, there have been no formal analyses of CGIs at the DNA sequence level in cattle genomes and therefore this study was carried out to fill the gap. We used hidden markov model alg...
متن کاملThe Effect of Replacing Barley Grain with Powerfeed® in Finishing Diets on the Performance, Serum Sodium and Potassium Concentration, and the Urine pH of Chall Lambs
Thirty six male Chall lambs (four-month old and 26 ±1.5 kg body weight) were randomly assigned into four treatments (nine lambs per treatment) to study the effect of Powerfeed® (a commercial mixture made from wheat processing by-product and wheat bran) on weight gain, feed intake, feed conversion ratio, serum sodium and potassium concentration and urine pH. Lambs in control group were fed with...
متن کاملMultiplexed highly-accurate DNA sequencing of closely-related HIV-1 variants using continuous long reads from single molecule, real-time sequencing.
Single Molecule, Real-Time (SMRT) Sequencing (Pacific Biosciences, Menlo Park, CA, USA) provides the longest continuous DNA sequencing reads currently available. However, the relatively high error rate in the raw read data requires novel analysis methods to deconvolute sequences derived from complex samples. Here, we present a workflow of novel computer algorithms able to reconstruct viral vari...
متن کامل